Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs531604 | chr11:104898383 | T/A | 1.68E-6 | 489 | 15.9 | 16.4 | 11.47 | KM Plot |
| THCA | rs536749 | chr1:4646485 | C/T | 0.000314 | 490 | 16.37 | 14.3 | 12.62 | KM Plot |
| THCA | rs537244 | chr15:41469313 | G/T | 0.000287 | 490 | 17.6 | 15.87 | 15.3 | KM Plot |
| THCA | rs545911 | chr11:104915441 | C/T | 1.91E-6 | 484 | 15.9 | 16.63 | 11.47 | KM Plot |
| THCA | rs548785 | chr11:104894617 | C/T | 1.63E-6 | 490 | 15.9 | 16.52 | 11.47 | KM Plot |
| THCA | rs548881 | chr1:74758545 | C/T | 6.88E-10 | 488 | 15.7 | 16.88 | 7.77 | KM Plot |
| THCA | rs555301 | chr11:104895327 | C/G | 1.66E-6 | 489 | 15.93 | 16.4 | 11.47 | KM Plot |
| THCA | rs556205 | chr11:104898008 | T/G | 1.68E-6 | 489 | 15.9 | 16.4 | 11.47 | KM Plot |
| THCA | rs55641400 | chr3:139264103 | T/C | 3.37E-5 | 489 | 15.9 | 17.1 | 13.08 | KM Plot |
| THCA | rs55642746 | chr3:139269414 | A/G | 4.78E-6 | 487 | 15.9 | 16.87 | 14.53 | KM Plot |
| THCA | rs55643005 | chr14:36133754 | T/C | 5.08E-6 | 490 | 15.93 | 16.35 | 8.33 | KM Plot |
| THCA | rs55643734 | chr19:11595121 | G/A | 5.74E-7 | 485 | 15.7 | 18.9 | 33.97 | KM Plot |
| THCA | rs55652952 | chr13:24890753 | C/T | 0.000316 | 486 | 15.17 | 17.8 | 17.08 | KM Plot |
| THCA | rs556594 | chr18:32718146 | C/T | 4.23E-6 | 489 | 15.8 | 16.3 | 14.17 | KM Plot |
| THCA | rs55662252 | chr11:66534517 | T/C | 0.000244 | 484 | 16.27 | 11.73 | 14.9 | KM Plot |